| Ontology | Download Version | Date | Notes |
| TGMA | 1.10 | 4 Feb 2009 | Digestive system expanded to provide terms needed to annotate gene expression experiments. |
| TGMA | 1.09 | 19 Aug 2008 | Ontology reworked in order to be compliant with BFO/CARO. |
| TGMA | 1.08 | 7 Mar 2007 | Initial version. |
| TADS | 1.21 | 13 Mar 2012 | Twenty new images have been added. |
| TADS | 1.2 | 12 Dec 2007 | Several definitions have been reworked. |
| TADS | 1.0 | 8 Aug 2007 | Initial version. |
| MIRO | 2.0 | 30 Jul 2010 | BFO compliant version. |
| MIRO | 1.8 | 28 May 2010 | Terms requested by ANVR added to the ontology. |
| MIRO | 1.2 | 07 May 2010 | No longer automatic import of GAZ. |
| MIRO | 1.1 | 08 Feb 2008 | No longer automatic import of ENVO. |
| IDOMAL | 1.2.4 | 26 May 2012 | Minor corrections to resolve parsing issues. |
| IDOMAL | 1.2.3 | 26 Jan 2012 | Minor corrections to resolve parsing issues. |
| IDOMAL | 1.2.2 | 21 Oct 2010 | Minor corrections to parasite organism tree. |
| IDOMAL | 1.2.1 | 17 Sept 2010 | No new terms added. Updated references to other ontologies. |
| IDOMAL | 1.2 | 01 Jul 2010 | Major restructuring of Anopheles breeding sites. |
| IDOMAL | 1.1 | 28 Apr 2010 | Interim version to follow the update of IDO. |
| IDOMAL | 1.0 | 13 Apr 2010 | A section describing malaria immunology has been added. Cross-references to other ontologies have been removed and the relevant terms got the appropriate IDs following MIREOT rules. |